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  5. Gb_11434

Gb_11434


Description : Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana (sp|q9c9u0|pp118_arath : 800.0)


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11434

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.07 OrthoFinder output from all 47 species
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.04 OrthoFinder output from all 47 species
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.02 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g06710.1 LOC_Os03g06710 Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
Pir_g20482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004055 No alias not classified & original description: CDS=1-1875 0.03 OrthoFinder output from all 47 species
Sam_g07959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 OrthoFinder output from all 47 species
Solyc07g054480.3.1 Solyc07g054480 Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species
Solyc09g083110.3.1 Solyc09g083110 Pentatricopeptide repeat-containing protein At3g23020... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 1166 1268
IPR002885 Pentatricopeptide_repeat 756 802
IPR002885 Pentatricopeptide_repeat 1494 1540
IPR002885 Pentatricopeptide_repeat 1007 1055
IPR002885 Pentatricopeptide_repeat 938 984
IPR002885 Pentatricopeptide_repeat 1391 1433
IPR002885 Pentatricopeptide_repeat 1289 1318
IPR002885 Pentatricopeptide_repeat 828 851
IPR002885 Pentatricopeptide_repeat 1325 1353
IPR002885 Pentatricopeptide_repeat 1359 1387
No external refs found!