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  5. Gb_10615

Gb_10615


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 764.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10615
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.04 OrthoFinder output from all 47 species
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_11454g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
MA_481619g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
MA_7379g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_835083g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_83898g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_9360929g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 335
IPR002885 Pentatricopeptide_repeat 81 111
IPR002885 Pentatricopeptide_repeat 337 366
IPR002885 Pentatricopeptide_repeat 112 141
IPR002885 Pentatricopeptide_repeat 205 233
IPR002885 Pentatricopeptide_repeat 701 729
IPR002885 Pentatricopeptide_repeat 368 398
IPR002885 Pentatricopeptide_repeat 50 80
IPR002885 Pentatricopeptide_repeat 399 428
IPR002885 Pentatricopeptide_repeat 635 658
IPR032867 DYW_dom 733 856
IPR002885 Pentatricopeptide_repeat 171 204
IPR002885 Pentatricopeptide_repeat 458 507
IPR002885 Pentatricopeptide_repeat 234 281
IPR002885 Pentatricopeptide_repeat 560 606
No external refs found!