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Gb_10339


Description : Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana (sp|q8gyp6|ppr49_arath : 853.0)


Gene families : OG0005181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10339
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
Dcu_g07132 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.04 OrthoFinder output from all 47 species
Mp2g13030.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.04 OrthoFinder output from all 47 species
Spa_g47367 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 754 783
IPR002885 Pentatricopeptide_repeat 785 832
IPR002885 Pentatricopeptide_repeat 610 658
IPR002885 Pentatricopeptide_repeat 680 726
IPR002885 Pentatricopeptide_repeat 537 588
No external refs found!