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  5. Gb_10087

Gb_10087 (PMH2, ATRH53)


Aliases : PMH2, ATRH53

Description : DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica (sp|q0d8n0|rh53_orysj : 524.0)


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10087

Target Alias Description ECC score Gene Family Method Actions
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.05 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.04 OrthoFinder output from all 47 species
Adi_g023797 PMH1, ATRH9 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03195 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Als_g05682 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Cba_g18561 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.38G064300.1 PRH75, Ceric.38G064300 not classified & original description: pacid=50580225... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.151 emb1138 DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.03 OrthoFinder output from all 47 species
Dac_g02286 PRH75 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000821001 PMH2, ATRH53 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Len_g23119 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g38604 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Msp_g22012 emb1138 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ore_g38810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g006320.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Spa_g06515 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g06691 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 200 365
IPR001650 Helicase_C 466 564
No external refs found!