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  5. Gb_09919

Gb_09919


Description : scaffolding component LCAA of Mg-protoporphyrin IX monomethylester cyclase complex


Gene families : OG0006125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_09919
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT5G58250 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
Aop_g18009 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Ceric.30G052300.1 Ceric.30G052300 scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.04 OrthoFinder output from all 47 species
Dac_g16639 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Dcu_g18827 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Ehy_g15832 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
GSVIVT01024524001 No alias Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... 0.05 OrthoFinder output from all 47 species
LOC_Os03g21370.1 LOC_Os03g21370 scaffolding component LCAA of Mg-protoporphyrin IX... 0.02 OrthoFinder output from all 47 species
Len_g20674 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Mp5g08000.1 No alias scaffolding component LCAA of Mg-protoporphyrin IX... 0.06 OrthoFinder output from all 47 species
Nbi_g03333 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0217.g026072 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.04 OrthoFinder output from all 47 species
Solyc06g007760.4.1 Solyc06g007760 scaffolding component LCAA of Mg-protoporphyrin IX... 0.06 OrthoFinder output from all 47 species
Spa_g16999 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Zm00001e001556_P001 Zm00001e001556 scaffolding component LCAA of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR019616 Ycf54 93 168
No external refs found!