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  5. Gb_09452

Gb_09452


Description : Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana (sp|o22714|ppr86_arath : 344.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_09452

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00059480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.04 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g016255 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07750 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09907 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060292 No alias RNA editing factor *(POCO) & original description: CDS=143-2071 0.03 OrthoFinder output from all 47 species
Azfi_s0492.g073535 No alias not classified & original description: CDS=381-2006 0.04 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.05 OrthoFinder output from all 47 species
Dde_g24432 No alias RNA editing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.07 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
Gb_38114 No alias RNA editing factor (POCO) 0.07 OrthoFinder output from all 47 species
LOC_Os01g17320.1 PPR596, LOC_Os01g17320 RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
LOC_Os01g19490.1 LOC_Os01g19490 Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.04 OrthoFinder output from all 47 species
LOC_Os04g25410.1 LOC_Os04g25410 Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
LOC_Os04g46010.1 LOC_Os04g46010 Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
LOC_Os10g35750.1 LOC_Os10g35750 Pentatricopeptide repeat-containing protein At2g20710,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.05 OrthoFinder output from all 47 species
Len_g15360 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
MA_10431989g0010 No alias RNA editing factor (POCO) 0.05 OrthoFinder output from all 47 species
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.06 OrthoFinder output from all 47 species
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_58210g0010 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
Ppi_g02315 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29727 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.04 OrthoFinder output from all 47 species
Solyc01g081320.4.1 Solyc01g081320 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
Solyc02g078330.3.1 Solyc02g078330 Pentatricopeptide repeat-containing protein At2g20710,... 0.06 OrthoFinder output from all 47 species
Solyc06g071900.3.1 Solyc06g071900 Pentatricopeptide repeat-containing protein At1g07590,... 0.04 OrthoFinder output from all 47 species
Solyc07g054090.3.1 Solyc07g054090 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
Tin_g14511 No alias RNA ediTing factor *(POCO) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.06 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 362
IPR002885 Pentatricopeptide_repeat 299 326
IPR019734 TPR_repeat 228 250
IPR002885 Pentatricopeptide_repeat 145 201
No external refs found!