Gb_08933 (PGP11)

Aliases : PGP11

Description : ABC transporter B family member 21 OS=Arabidopsis thaliana (sp|q9m1q9|ab21b_arath : 160.0)

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08933
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Adi_g007985	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g012284	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088971	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g07511	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05873.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08446.t1	PGP11, Aspi01Gene08446	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08454.t1	PGP11, Aspi01Gene08454	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene15960.t1	Aspi01Gene15960	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene15961.t1	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42794.t3	PGP3, MDR3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46795.t1	PGP2, Aspi01Gene46795	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62053.t1	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02960	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09264	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Gb_10216	No alias	subfamily ABCB transporter	0.06	OrthoFinder output from all 47 species
Gb_13909	PGP2	ABC transporter B family member 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g19766	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g27278	No alias	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g42482	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	106	144
IPR003439	ABC_transporter-like_ATP-bd	146	175

External Links

No external refs found!

Gb_08933 (PGP11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation