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  5. Gb_08489

Gb_08489


Description : component RPL11 of LSU proteome component


Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08489
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.38 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g027000 RPL16A Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Mp2g24740.1 RPL16A component RPL11 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp6g18870.1 RPL16A component RPL11 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g25528 No alias component *(uL5) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e024913_P001 RPL16A, Zm00001e024913 component RPL11 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 1 88
No external refs found!