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  5. Gb_08037

Gb_08037 (PTAC12, HMR)


Aliases : PTAC12, HMR

Description : PAP5/TAC12 cofactor of plastid-encoded RNA polymerase. transcriptional coactivator (HEMERA)


Gene families : OG0007916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08037
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT2G34640 PTAC12, HMR plastid transcriptionally active 12 0.05 OrthoFinder output from all 47 species
Azfi_s0068.g036416 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g32331 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01021555001 PTAC12, HMR RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 OrthoFinder output from all 47 species
LOC_Os01g56350.3 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
MA_8815984g0010 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.03 OrthoFinder output from all 47 species
Mp1g24680.1 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.08 OrthoFinder output from all 47 species
Solyc02g070390.3.1 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.05 OrthoFinder output from all 47 species
Zm00001e019697_P001 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!