Aliases : EMB2261
Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 691.0)
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00016p00115350 | RARE1,... | Pentatricopeptide repeat-containing protein At5g13270,... | 0.09 | OrthoFinder output from all 47 species | |
AMTR_s00029p00204910 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g19191,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00061p00127300 | MEF22,... | Pentatricopeptide repeat-containing protein At3g12770... | 0.05 | OrthoFinder output from all 47 species | |
AT1G15510 | VAC1, ECB2, ATECB2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT2G02980 | OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | 0.1 | OrthoFinder output from all 47 species | |
AT3G63370 | OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
AT5G03800 | emb1899, EMB175, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Ala_g35873 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene21013.t1 | CRR22, Aspi01Gene21013 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.11G078400.1 | Ceric.11G078400 | not classified & original description: pacid=50596841... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G024800.1 | Ceric.29G024800 | not classified & original description: pacid=50625545... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g08885 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g42645 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g47670 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dde_g03875 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015466001 | LPA66 | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01023971001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01033004001 | No alias | Pentatricopeptide repeat-containing protein At3g26782,... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01036142001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g50280.1 | CRR22, LOC_Os02g50280 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g04390.1 | LOC_Os03g04390 | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g59264.1 | LOC_Os03g59264 | lectin chaperone (CRT) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g39410.1 | OTP86, LOC_Os04g39410 | RNA editing factor (OTP86) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g51350.1 | LOC_Os04g51350 | RNA editing factor (AEF1) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os05g12130.1 | EMB2261, LOC_Os05g12130 | RNA editing factor (ECD1) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g23960.1 | LOC_Os05g23960 | Pentatricopeptide repeat-containing protein At5g16860... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g49920.1 | VAC1, ECB2,... | RNA editing factor (ECB2/VAC1) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g50950.1 | LOC_Os05g50950 | Pentatricopeptide repeat-containing protein At4g01030,... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os07g02280.1 | LOC_Os07g02280 | RNA editing factor (OTP80) | 0.03 | OrthoFinder output from all 47 species | |
Len_g18559 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g07383 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
MA_10426261g0020 | CRR22 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
MA_10428121g0010 | REME1 | Pentatricopeptide repeat-containing protein At4g37170... | 0.09 | OrthoFinder output from all 47 species | |
MA_10429371g0010 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
MA_10429540g0010 | LOI1, MEF11 | Pentatricopeptide repeat-containing protein At4g14850... | 0.06 | OrthoFinder output from all 47 species | |
MA_10429958g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | OrthoFinder output from all 47 species | |
MA_10430355g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
MA_10431508g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
MA_11454g0010 | OTP84 | Pentatricopeptide repeat-containing protein At2g27610... | 0.06 | OrthoFinder output from all 47 species | |
MA_114565g0020 | OTP84 | Pentatricopeptide repeat-containing protein At5g16860... | 0.07 | OrthoFinder output from all 47 species | |
MA_116829g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | OrthoFinder output from all 47 species | |
MA_13057g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | OrthoFinder output from all 47 species | |
MA_136498g0010 | CRR22 | Pentatricopeptide repeat-containing protein At2g22070... | 0.03 | OrthoFinder output from all 47 species | |
MA_16823g0010 | CRR22 | RNA editing factor (MEF19) | 0.03 | OrthoFinder output from all 47 species | |
MA_184104g0010 | CRR22 | Pentatricopeptide repeat-containing protein At2g22070... | 0.02 | OrthoFinder output from all 47 species | |
MA_185098g0010 | EMB2261 | Pentatricopeptide repeat-containing protein At3g49170,... | 0.08 | OrthoFinder output from all 47 species | |
MA_189553g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
MA_20899g0020 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
MA_28607g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
MA_3612g0010 | CRR22 | Pentatricopeptide repeat-containing protein At5g16860... | 0.05 | OrthoFinder output from all 47 species | |
MA_442926g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
MA_481619g0010 | CRR22 | Pentatricopeptide repeat-containing protein DOT4,... | 0.08 | OrthoFinder output from all 47 species | |
MA_483636g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.05 | OrthoFinder output from all 47 species | |
MA_50789g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | OrthoFinder output from all 47 species | |
MA_519985g0010 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
MA_59148g0010 | CRR22 | RNA editing factor (MEF11) | 0.02 | OrthoFinder output from all 47 species | |
MA_656915g0010 | CRR22 | Pentatricopeptide repeat-containing protein DOT4,... | 0.02 | OrthoFinder output from all 47 species | |
MA_68718g0020 | CRR22 | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | OrthoFinder output from all 47 species | |
MA_7379g0020 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
MA_89214g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.04 | OrthoFinder output from all 47 species | |
MA_9360929g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.08 | OrthoFinder output from all 47 species | |
MA_96662g0010 | CRR22 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
MA_98224g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0001.g000158 | No alias | not classified & original description: CDS=1-2931 | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0009.g004580 | No alias | not classified & original description: CDS=1-2331 | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e003605_P001 | DOT4, Zm00001e003605 | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e031351_P001 | EMB2261, Zm00001e031351 | RNA editing factor (ECD1) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e034445_P001 | LPA66, Zm00001e034445 | Pentatricopeptide repeat-containing protein At5g48910... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 730 | 759 |
IPR002885 | Pentatricopeptide_repeat | 665 | 687 |
IPR002885 | Pentatricopeptide_repeat | 160 | 184 |
IPR002885 | Pentatricopeptide_repeat | 564 | 589 |
IPR032867 | DYW_dom | 764 | 886 |
IPR002885 | Pentatricopeptide_repeat | 287 | 333 |
IPR002885 | Pentatricopeptide_repeat | 489 | 534 |
IPR002885 | Pentatricopeptide_repeat | 590 | 637 |
IPR002885 | Pentatricopeptide_repeat | 188 | 233 |
IPR002885 | Pentatricopeptide_repeat | 388 | 435 |
No external refs found! |