Aliases : ATHDA19, HDA1, HD1, ATHD1, HDA19, RPD3A
Description : class-I histone deacetylase. deacetylase component HDA19 of SNL-HDA19 histone deacetylase complex
Gene families : OG0000827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000827_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Als_g25767 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000215.121 | ATHDA19, HDA1,... | Chromatin organisation.histone modifications.histone... | 0.01 | OrthoFinder output from all 47 species | |
LOC_Os08g25570.1 | HDA6, RTS1,... | class-I histone deacetylase | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g05599 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.05 | OrthoFinder output from all 47 species | |
MA_10427274g0010 | HDA6, RTS1,... | class-I histone deacetylase | 0.03 | OrthoFinder output from all 47 species | |
Pir_g43104 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g07273 | ATHDA19, HDA1,... | EC_3.5 hydrolase acTing on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e037309_P002 | ATHDA19, HDA1,... | class-I histone deacetylase. deacetylase component HDA19... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000272 | polysaccharide catabolic process | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0004470 | malic enzyme activity | IEP | HCCA |
MF | GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
MF | GO:0016160 | amylase activity | IEP | HCCA |
MF | GO:0016161 | beta-amylase activity | IEP | HCCA |
MF | GO:0016615 | malate dehydrogenase activity | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
MF | GO:0051287 | NAD binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR023801 | His_deacetylse_dom | 36 | 324 |
No external refs found! |