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  5. Gb_07316

Gb_07316


Description : Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana (sp|q9c9u0|pp118_arath : 837.0)


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07316

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.04 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species
Solyc07g054480.3.1 Solyc07g054480 Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 596 624
IPR002885 Pentatricopeptide_repeat 526 555
IPR002885 Pentatricopeptide_repeat 208 230
IPR002885 Pentatricopeptide_repeat 633 659
IPR002885 Pentatricopeptide_repeat 561 590
IPR002885 Pentatricopeptide_repeat 665 694
IPR002885 Pentatricopeptide_repeat 800 847
IPR002885 Pentatricopeptide_repeat 699 739
IPR002885 Pentatricopeptide_repeat 457 499
IPR002885 Pentatricopeptide_repeat 135 182
IPR033443 PPR_long 242 427
No external refs found!