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  5. Gb_07042

Gb_07042


Description : plastidial mRNA processing factor (PPR10)


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07042
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.04 OrthoFinder output from all 47 species
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g02296 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13980 EMB1270 stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40120.1 LOC_Os07g40120 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
Sam_g13568 No alias stability factor *(PPR10) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 809 834
IPR002885 Pentatricopeptide_repeat 500 530
IPR002885 Pentatricopeptide_repeat 416 476
IPR002885 Pentatricopeptide_repeat 310 371
IPR002885 Pentatricopeptide_repeat 240 301
IPR002885 Pentatricopeptide_repeat 662 721
IPR002885 Pentatricopeptide_repeat 536 581
IPR002885 Pentatricopeptide_repeat 742 790
No external refs found!