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  5. Gb_07025

Gb_07025


Description : transcription factor (REM)


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07025

Target Alias Description ECC score Gene Family Method Actions
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.04 OrthoFinder output from all 47 species
Ala_g04057 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g22457 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24428 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01024536001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
LOC_Os06g09420.1 LOC_Os06g09420 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.03 OrthoFinder output from all 47 species
MA_175090g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_430451g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c2_5990V3.1 Pp3c2_5990 AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.02 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Solyc06g007530.2.1 Solyc06g007530 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Solyc06g034140.3.1 Solyc06g034140 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 139 226
No external refs found!