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  5. Gb_06832

Gb_06832


Description : component psRPS4 of small ribosomal subunit proteome


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06832

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.2 OrthoFinder output from all 47 species
Aev_g09926 No alias not classified & original description: none 0.21 OrthoFinder output from all 47 species
Aev_g45669 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g03663 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g77949 RPS4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ceric.09G048000.1 RPS4, Ceric.09G048000 component *(uS4c) of small plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Ceric.33G023900.1 RPS4, Ceric.33G023900 component *(uS4c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.21 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.21 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.21 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g23778 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Solyc00g500212.1.1 RPS4, Solyc00g500212 component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Solyc11g022610.1.1 RPS4, Solyc11g022610 30S ribosomal protein S4, chloroplastic OS=Solanum... 0.07 OrthoFinder output from all 47 species
Zm00001e003895_P001 RPS4, Zm00001e003895 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e003908_P001 RPS4, Zm00001e003908 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e013560_P001 RPS4, Zm00001e013560 component psRPS4 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042033_P001 RPS4, Zm00001e042033 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e042054_P001 RPS4, Zm00001e042054 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e042078_P001 RPS4, Zm00001e042078 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e042098_P001 RPS4, Zm00001e042098 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Zm00001e042353_P001 RPS4, Zm00001e042353 component psRPS4 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 4 48
No external refs found!