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  5. Gb_06568

Gb_06568 (REME1)


Aliases : REME1

Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana (sp|q9si53|pp147_arath : 543.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06568
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023764 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04075 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G024400.1 Ceric.07G024400 not classified & original description: pacid=50626298... 0.03 OrthoFinder output from all 47 species
Ceric.28G068300.1 DOT4, Ceric.28G068300 not classified & original description: pacid=50570176... 0.03 OrthoFinder output from all 47 species
Dde_g04388 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05845 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
GSVIVT01035837001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Gb_10713 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_14392 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_21442 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
Gb_38248 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_41234 OTP86 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_100606g0010 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_10426261g0020 CRR22 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_10428121g0010 REME1 Pentatricopeptide repeat-containing protein At4g37170... 0.04 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_10429540g0010 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.04 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_11454g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 OrthoFinder output from all 47 species
MA_136498g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_20899g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_27147g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
MA_27726g0010 VAC1, ECB2, ATECB2 RNA editing factor (ECB2/VAC1) 0.06 OrthoFinder output from all 47 species
MA_28390g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
MA_33151g0010 OTP86 Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.06 OrthoFinder output from all 47 species
MA_36643g0010 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
MA_385322g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
MA_6511g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_653417g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_73205g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_83662g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_96662g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09823 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g14968 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28538 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25064 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30634 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 548 671
IPR002885 Pentatricopeptide_repeat 146 169
IPR002885 Pentatricopeptide_repeat 450 474
IPR002885 Pentatricopeptide_repeat 274 321
IPR002885 Pentatricopeptide_repeat 375 421
IPR002885 Pentatricopeptide_repeat 172 219
No external refs found!