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  5. Gb_05939

Gb_05939


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 694.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05939
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00058270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g005761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021679 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034320 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076147 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098198 SLO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 OrthoFinder output from all 47 species
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01032394001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_02060 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_02379 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_04990 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_05259 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Gb_05488 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_09382 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_09792 No alias RNA editing factor (MEF7) 0.03 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 OrthoFinder output from all 47 species
Gb_15507 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_17382 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
Gb_30942 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_31319 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.05 OrthoFinder output from all 47 species
Gb_33718 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_33727 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_38750 No alias RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_40121 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g56850.1 LOC_Os03g56850 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
MA_100606g0010 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_10277392g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_10311934g0010 MEF22 Pentatricopeptide repeat-containing protein At1g15510,... 0.03 OrthoFinder output from all 47 species
MA_10426261g0020 CRR22 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_10429540g0010 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.04 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_10429958g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_10430355g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_104937g0010 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_11454g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_118886g0010 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_122546g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_13022g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 OrthoFinder output from all 47 species
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_136188g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
MA_140591g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_14659g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_16226g0010 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_185098g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.04 OrthoFinder output from all 47 species
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_205762g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_20899g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_27147g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.04 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_305950g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_32723g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.04 OrthoFinder output from all 47 species
MA_36643g0010 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
MA_38687g0010 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.04 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_481619g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
MA_49292g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_56660g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_59148g0010 CRR22 RNA editing factor (MEF11) 0.06 OrthoFinder output from all 47 species
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
MA_62181g0010 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.07 OrthoFinder output from all 47 species
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
MA_658463g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_681272g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_73205g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_75133g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
MA_921g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_95261g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_97789g0010 CRR22 Pentatricopeptide repeat-containing protein At3g26540... 0.04 OrthoFinder output from all 47 species
Solyc01g090510.2.1 Solyc01g090510 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc01g110010.3.1 Solyc01g110010 Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Solyc03g119120.3.1 Solyc03g119120 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc05g009400.3.1 Solyc05g009400 Pentatricopeptide repeat-containing protein At3g29230... 0.04 OrthoFinder output from all 47 species
Solyc05g012630.2.1 Solyc05g012630 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc06g069700.4.1 Solyc06g069700 Pentatricopeptide repeat-containing protein At5g61400... 0.03 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc08g023640.1.1 Solyc08g023640 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e003284_P001 Zm00001e003284 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
Zm00001e021380_P001 Zm00001e021380 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Zm00001e030887_P001 Zm00001e030887 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.03 OrthoFinder output from all 47 species
Zm00001e035654_P001 EMB2758, Zm00001e035654 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Zm00001e036537_P001 Zm00001e036537 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e037600_P001 Zm00001e037600 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 852 976
IPR002885 Pentatricopeptide_repeat 653 675
IPR002885 Pentatricopeptide_repeat 451 475
IPR002885 Pentatricopeptide_repeat 753 777
IPR002885 Pentatricopeptide_repeat 376 423
IPR002885 Pentatricopeptide_repeat 477 523
IPR002885 Pentatricopeptide_repeat 679 725
IPR002885 Pentatricopeptide_repeat 174 220
IPR002885 Pentatricopeptide_repeat 275 321
IPR002885 Pentatricopeptide_repeat 578 625
No external refs found!