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  5. Gb_05303

Gb_05303 (RTM1)


Aliases : RTM1

Description : Jacalin-related lectin 3 OS=Arabidopsis thaliana (sp|f4hqx1|jal3_arath : 93.2)


Gene families : OG0001384 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001384_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05303

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00183970 evm_27.TU.AmTr_v1... Jacalin-related lectin 19 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G52000 No alias Mannose-binding lectin superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G52030 MBP1.2, F-ATMBP, MBP2 myrosinase-binding protein 2 0.02 OrthoFinder output from all 47 species
AT2G39330 JAL23 jacalin-related lectin 23 0.04 OrthoFinder output from all 47 species
AT3G16420 PBP1, JAL30 PYK10-binding protein 1 0.03 OrthoFinder output from all 47 species
AT3G16470 JR1 Mannose-binding lectin superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G21380 No alias Mannose-binding lectin superfamily protein 0.03 OrthoFinder output from all 47 species
LOC_Os01g24710.2 JAL23, LOC_Os01g24710 Salt stress-induced protein OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os01g51050.1 LOC_Os01g51050 Jacalin-related lectin 19 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g14440.1 LOC_Os12g14440 Salt stress-induced protein OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_473550g0010 No alias Jacalin-related lectin 19 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g33461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029551_P002 Zm00001e029551 Salt stress-induced protein OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR001229 Jacalin-like_lectin_dom 55 190
No external refs found!