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  5. Gb_05294

Gb_05294


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 145.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05294
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Adi_g040367 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g097485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g10343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g25317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g26449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g29145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35825 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g39470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40244 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g43660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g46334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25788 ORF120 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36443 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g65247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29587.t1 Aspi01Gene29587 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene33395.t1 ORF120, Aspi01Gene33395 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37237.t1 Aspi01Gene37237 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37633.t1 Aspi01Gene37633 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene63791.t1 Aspi01Gene63791 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g32961 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35635 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40272 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g24035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_00777 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_05081 ORF120 Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_05523 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_08105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_08402 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_13962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_26975 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_30261 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_30314 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_34551 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_37606 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_41335 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Msp_g34969 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45324 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g46637 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g34520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g02239 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c16_770V3.1 Pp3c16_770 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c24_5020V3.1 Pp3c24_5020 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c25_8680V3.1 Pp3c25_8680 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c26_8890V3.1 Pp3c26_8890 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c4_23690V3.1 Pp3c4_23690 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c8_9221V3.1 Pp3c8_9221 No annotation 0.02 OrthoFinder output from all 47 species
Ppi_g23180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g54131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 36 152
No external refs found!