Gb_05164 (ORF170)

Aliases : ORF170

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 647.0)

Gene families : OG0000039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_05164

Target	Alias	Description	ECC score	Gene Family Method
Gb_12061	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	OrthoFinder output from all 47 species
Gb_13716	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	OrthoFinder output from all 47 species
Gb_14689	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_16884	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.25	OrthoFinder output from all 47 species
Gb_19072	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	OrthoFinder output from all 47 species
Gb_23494	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.14	OrthoFinder output from all 47 species
Gb_26037	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	346	413
IPR013103	RVT_2	773	896
IPR001584	Integrase_cat-core	430	542

External Links

No external refs found!