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Gb_05090


Description : Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q8lds4|nakr1_arath : 82.8)


Gene families : OG0000090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05090
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00210890 evm_27.TU.AmTr_v1... Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ala_g16301 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0012.g012956 No alias not classified & original description: CDS=94-510 0.05 OrthoFinder output from all 47 species
Cba_g16355 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dac_g12205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g06080.1 HIPP27, LOC_Os03g06080 Heavy metal-associated isoprenylated plant protein 27... 0.03 OrthoFinder output from all 47 species
Lfl_g30532 HIPP20 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_54284g0010 No alias Heavy metal-associated isoprenylated plant protein 23... 0.04 OrthoFinder output from all 47 species
MA_71520g0010 No alias Heavy metal-associated isoprenylated plant protein 28... 0.03 OrthoFinder output from all 47 species
Mp2g01800.1 ATX1, ATATX1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g20370.1 No alias copper chaperone (CCH) 0.06 OrthoFinder output from all 47 species
Msp_g08746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g19777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0670.g027610 CCH copper chaperone *(ATX/CCH) & original description: CDS=1-243 0.05 OrthoFinder output from all 47 species
Spa_g01504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0030001 metal ion transport IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR006121 HMA_dom 129 181
No external refs found!