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  5. Gb_04540

Gb_04540


Description : component mtRPL4 of large ribosomal subunit proteome


Gene families : OG0005986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04540
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Ceric.24G005200.1 Ceric.24G005200 component *(uL4m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g44796 No alias component *(uL4m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01004810001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
LOC_Os11g37510.1 LOC_Os11g37510 component mtRPL4 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp4g00020.1 No alias component mtRPL4 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Pp3c13_15330V3.1 Pp3c13_15330 Ribosomal protein L4/L1 family 0.03 OrthoFinder output from all 47 species
Solyc12g088730.2.1 Solyc12g088730 component mtRPL4 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e006048_P001 Zm00001e006048 component mtRPL4 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 81 267
No external refs found!