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  5. Gb_04402

Gb_04402


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 524.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04402

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
Als_g61873 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g11909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G008900.1 Ceric.14G008900 not classified & original description: pacid=50634493... 0.04 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02808 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Gb_07570 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_08964 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_13303 CRR22 RNA editing factor (MEF19) 0.07 OrthoFinder output from all 47 species
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_15506 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_17091 CRR22 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_18979 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.08 OrthoFinder output from all 47 species
Gb_26723 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_28764 CRR2 RNA editing factor (MEF1) 0.05 OrthoFinder output from all 47 species
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_29868 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.05 OrthoFinder output from all 47 species
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_33719 No alias RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_33828 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_36178 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_38292 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_40766 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
Gb_41341 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
Len_g09780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_210089g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Pnu_g03821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15488 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32978 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.08 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g44240 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 535 562
IPR002885 Pentatricopeptide_repeat 213 240
IPR002885 Pentatricopeptide_repeat 272 296
IPR002885 Pentatricopeptide_repeat 241 271
IPR002885 Pentatricopeptide_repeat 740 764
IPR002885 Pentatricopeptide_repeat 39 87
IPR002885 Pentatricopeptide_repeat 666 714
IPR002885 Pentatricopeptide_repeat 401 449
IPR002885 Pentatricopeptide_repeat 137 185
IPR002885 Pentatricopeptide_repeat 300 348
IPR002885 Pentatricopeptide_repeat 503 534
IPR002885 Pentatricopeptide_repeat 565 611
No external refs found!