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  5. Gb_03693

Gb_03693


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 620.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03693

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0068.g036254 No alias not classified & original description: CDS=1-1464 0.08 OrthoFinder output from all 47 species
Dde_g49820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_06576 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_13599 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_3471g0010 OTP84 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
MA_376862g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_385322g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
MA_8319g0010 CRR2 Pentatricopeptide repeat-containing protein At3g24000,... 0.06 OrthoFinder output from all 47 species
Nbi_g06277 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40735 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g01375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g074160.3.1 Solyc04g074160 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 177
IPR002885 Pentatricopeptide_repeat 555 579
IPR002885 Pentatricopeptide_repeat 622 650
IPR002885 Pentatricopeptide_repeat 354 379
IPR002885 Pentatricopeptide_repeat 86 109
IPR032867 DYW_dom 656 778
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 481 527
IPR002885 Pentatricopeptide_repeat 381 427
No external refs found!