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  5. Gb_02490

Gb_02490 (PUB23)


Aliases : PUB23

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 345.0)


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02490

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00159240 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00161650 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00069p00038840 PUB22,... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.02 OrthoFinder output from all 47 species
AT5G37490 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g15461 CMPG2, ATCMPG2 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11423 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12715 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37093 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04774 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12032.t1 PUB25, Aspi01Gene12032 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene19351.t1 Aspi01Gene19351 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g00903 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26825 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02628 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_02635 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g33680.1 CMPG2, ATCMPG2,... U-box domain-containing protein 29 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g46500.1 PUB23, LOC_Os02g46500 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os03g13740.1 LOC_Os03g13740 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g34030.1 PUB23, LOC_Os04g34030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g34140.1 PUB29, ATPUB29,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g58920.1 PUB23, LOC_Os04g58920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_126399g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_58844g0020 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_61761g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8030489g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp3g01700.1 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g08919 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05122 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c22_7680V3.1 Pp3c22_7680 CYS, MET, PRO, and GLY protein 2 0.01 OrthoFinder output from all 47 species
Ppi_g42738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15131 No alias E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Smo231257 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g007010.2.1 PUB22, Solyc01g007010 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007020.4.1 PUB23, Solyc01g007020 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007030.3.1 PUB22, Solyc01g007030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007040.4.1 PUB22, Solyc01g007040 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc01g009330.1.1 PUB22, Solyc01g009330 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g107980.3.1 PUB26, Solyc01g107980 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g074140.1.1 PUB24, Solyc06g074140 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g006030.1.1 Solyc11g006030 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g068920.1.1 PUB23, Solyc11g068920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g068940.1.1 PUB24, Solyc11g068940 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014766_P001 CMPG2, ATCMPG2,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e022679_P001 CMPG2, ATCMPG2,... U-box domain-containing protein 29 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e039417_P001 PUB23, Zm00001e039417 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e041397_P001 PUB23, Zm00001e041397 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 84
No external refs found!