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  5. Gb_02375

Gb_02375 (CRR22)


Aliases : CRR22

Description : RNA editing factor (MEF19)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02375

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00115350 RARE1,... Pentatricopeptide repeat-containing protein At5g13270,... 0.05 OrthoFinder output from all 47 species
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.08 OrthoFinder output from all 47 species
AMTR_s00061p00127300 MEF22,... Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
AMTR_s00081p00056740 OTP82,... Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 OrthoFinder output from all 47 species
Aev_g36018 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g06729 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04389 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21628 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ceric.06G079700.1 CRR22, Ceric.06G079700 not classified & original description: pacid=50619673... 0.09 OrthoFinder output from all 47 species
Ceric.16G024400.1 Ceric.16G024400 not classified & original description: pacid=50589838... 0.05 OrthoFinder output from all 47 species
Ceric.19G076600.1 Ceric.19G076600 not classified & original description: pacid=50576300... 0.05 OrthoFinder output from all 47 species
Ceric.31G059600.1 Ceric.31G059600 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g44824 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06788 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08479 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08646 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13254 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g25892 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g33337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47804 MEF21 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g48764 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g12271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000420001 MEF22 RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
GSVIVT01000936001 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.05 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01010647001 SLO1 Pentatricopeptide repeat-containing protein At2g22410,... 0.08 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
GSVIVT01015087001 CRR2 Pentatricopeptide repeat-containing protein At1g11290,... 0.09 OrthoFinder output from all 47 species
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.11 OrthoFinder output from all 47 species
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.06 OrthoFinder output from all 47 species
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
GSVIVT01030054001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
GSVIVT01031265001 LPA66 Pentatricopeptide repeat-containing protein At5g66520... 0.06 OrthoFinder output from all 47 species
GSVIVT01036757001 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.06 OrthoFinder output from all 47 species
Gb_03221 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_05116 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_06193 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_07756 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_14728 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 OrthoFinder output from all 47 species
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_36434 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Gb_37554 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
LOC_Os06g12510.1 LOC_Os06g12510 Pentatricopeptide repeat-containing protein At5g15300... 0.08 OrthoFinder output from all 47 species
Len_g03382 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g03634 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26584 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g34129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44142 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g42008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004580 No alias not classified & original description: CDS=1-2331 0.04 OrthoFinder output from all 47 species
Smo21427 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 OrthoFinder output from all 47 species
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.05 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc02g005280.1.1 Solyc02g005280 Pentatricopeptide repeat-containing protein At1g50270... 0.04 OrthoFinder output from all 47 species
Solyc03g007840.1.1 Solyc03g007840 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc03g116000.1.1 Solyc03g116000 Pentatricopeptide repeat-containing protein At3g47530... 0.04 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc04g009000.1.1 Solyc04g009000 RNA editing factor (SLO2) 0.03 OrthoFinder output from all 47 species
Solyc06g009500.1.1 Solyc06g009500 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Solyc06g084580.1.1 Solyc06g084580 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Solyc09g082170.4.1 Solyc09g082170 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc11g008970.1.1 Solyc11g008970 Pentatricopeptide repeat-containing protein At4g39952,... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Tin_g19427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g39956 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 191
IPR002885 Pentatricopeptide_repeat 447 494
IPR002885 Pentatricopeptide_repeat 245 292
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 220 244
IPR032867 DYW_dom 621 744
No external refs found!