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  5. Gb_02140

Gb_02140 (SNM1, ATSNM1)


Aliases : SNM1, ATSNM1

Description : SNM interstrand crosslink repair factor


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02140
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cre09.g399907 No alias DNA ligase 6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01000444001 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os09g26760.1 LOC_Os09g26760 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
MA_31065g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_611292g0010 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Mp1g24430.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Spa_g31386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009882_P001 Zm00001e009882 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!