1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_01729

Gb_01729


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 89.4)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01729

Target Alias Description ECC score Gene Family Method Actions
Aev_g24902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33464 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33605 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g44106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_04010 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.1 OrthoFinder output from all 47 species
Gb_06223 ORF145A Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_06978 ORF145A Retrovirus-related Pol polyprotein from transposon TNT... 0.12 OrthoFinder output from all 47 species
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_13320 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_14962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_15820 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_15908 ORF120 Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_19407 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_19550 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_21118 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_25092 No alias no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_27233 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_28316 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 OrthoFinder output from all 47 species
Gb_29919 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_29931 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_33444 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 OrthoFinder output from all 47 species
Gb_36581 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 OrthoFinder output from all 47 species
Gb_37614 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_39185 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_39504 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 OrthoFinder output from all 47 species
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 OrthoFinder output from all 47 species
MA_137010g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g14827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c18_6460V3.1 Pp3c18_6460 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c3_18210V3.1 Pp3c3_18210 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c9_7160V3.1 Pp3c9_7160 No annotation 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 51 102
No external refs found!