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  5. Gb_01340

Gb_01340 (RPT5A, ATS6A.2)


Aliases : RPT5A, ATS6A.2

Description : regulatory component RPT5 of 26S proteasome


Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00104360 RPT5A, ATS6A.2,... Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
AT3G05530 RPT5A, ATS6A.2 regulatory particle triple-A ATPase 5A 0.03 OrthoFinder output from all 47 species
Aop_g07899 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.14G077800.1 RPT5A, ATS6A.2,... regulatory component *(RPT5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001187.20 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Oryza... 0.03 OrthoFinder output from all 47 species
Cre10.g439150 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56000.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os06g07630.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Mp3g09490.1 RPT5A, ATS6A.2 regulatory component RPT5 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Ore_g13206 RPT5A, ATS6A.2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c5_21920V3.1 RPT5A, ATS6A.2,... regulatory particle triple-A ATPase 5A 0.03 OrthoFinder output from all 47 species
Smo74992 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Solyc01g099760.3.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Tin_g01827 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Zm00001e016153_P002 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e031055_P001 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB_C 74 150
IPR041569 AAA_lid_3 363 407
IPR003959 ATPase_AAA_core 208 340
No external refs found!