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  5. Gb_00777

Gb_00777


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 162.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_00777

Target Alias Description ECC score Gene Family Method Actions
Adi_g013674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g033969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25788 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_04010 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_05081 ORF120 Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_05294 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_08095 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_08105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_23548 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_25323 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_26132 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_27945 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_28242 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_30314 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_33583 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_38136 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_40384 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_41335 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Lfl_g37977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34520 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41753 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44189 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g21365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_770V3.1 Pp3c16_770 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c24_5020V3.1 Pp3c24_5020 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c4_23690V3.1 Pp3c4_23690 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c8_9221V3.1 Pp3c8_9221 No annotation 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 10 126
No external refs found!