Gb_00434

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 148.0)

Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_00434

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00163p00055330	No alias	No description available	0.02	OrthoFinder output from all 47 species
Adi_g035278	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g066526	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g102013	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g40082	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23317	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g12244	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene00518.t1	ORF120, Aspi01Gene00518	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene16660.t1	Aspi01Gene16660	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene22968.t1	Aspi01Gene22968	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene25751.t1	ORF120, Aspi01Gene25751	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32979.t1	Aspi01Gene32979	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33527.t1	Aspi01Gene33527	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35033.t1	ORF120, Aspi01Gene35033	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44452.t1	Aspi01Gene44452	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene45192.t1	Aspi01Gene45192	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54200.t1	ORF240B, Aspi01Gene54200	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54300.t1	Aspi01Gene54300	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65786.t1	Aspi01Gene65786	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene72777.t1	Aspi01Gene72777	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g15017	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g42054	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15368	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16443	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_00288	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Gb_00777	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_06074	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_06223	ORF145A	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	OrthoFinder output from all 47 species
Gb_06978	ORF145A	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	OrthoFinder output from all 47 species
Gb_10322	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	OrthoFinder output from all 47 species
Gb_13701	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_13962	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_14301	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_16799	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_17887	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_24597	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	OrthoFinder output from all 47 species
Gb_27945	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_28242	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	OrthoFinder output from all 47 species
Gb_29350	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_29919	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_30240	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_30261	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Gb_30314	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_30317	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_33414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	OrthoFinder output from all 47 species
Gb_33583	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_37775	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	OrthoFinder output from all 47 species
Gb_38122	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_38136	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_39221	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	OrthoFinder output from all 47 species
Gb_39504	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Len_g27574	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g36364	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g04308	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g31967	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g38290	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g06981	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g07042	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16647	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28388	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g41910	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g38977	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g40706	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c20_3370V3.1	Pp3c20_3370	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c25_11001V3.1	Pp3c25_11001	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c6_17100V3.1	Pp3c6_17100	No annotation	0.01	OrthoFinder output from all 47 species
Solyc01g016305.1.1	Solyc01g016305	Retrovirus-related Pol polyprotein from transposon RE1...	0.03	OrthoFinder output from all 47 species
Spa_g13342	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g25376	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g16944	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g26822	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	13	105

External Links

No external refs found!

Gb_00434

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation