Cpa|evm.model.tig00022080.1 (PHYD)

Aliases : PHYD

Description : Phytochrome B OS=Sorghum bicolor

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00022080.1
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
Ala_g02630	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.29G025400.1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original...	0.01	OrthoFinder output from all 47 species
Ore_g35990	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g09246	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003018	GAF	198	363
IPR013515	Phytochrome_cen-reg	396	576

External Links

No external refs found!

Cpa|evm.model.tig00022080.1 (PHYD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation