Cpa|evm.model.tig00021760.3 (CHR20, ATRX)

Aliases : CHR20, ATRX

Description : Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana

Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021760.3

Target	Alias	Description	ECC score	Gene Family Method
Adi_g021727	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g21446	CHR20, ATRX	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g16593	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene14539.t1	CHR20, ATRX,...	chromatin remodeling factor *(ATRX) & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene40157.t1	CHR20, ATRX,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.11G086900.1	CHR20, ATRX,...	chromatin remodeling factor *(ATRX) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g09273	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01023393001	CHR20, ATRX	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
LOC_Os10g31970.1	CHR20, ATRX,...	chromatin remodeling factor (ATRX)	0.01	OrthoFinder output from all 47 species
Lfl_g03487	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g07463	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000167	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original...	0.01	OrthoFinder output from all 47 species
Smo408746	CHR20, ATRX	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Smo441095	CHR20, ATRX	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Spa_g06181	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006353	DNA-templated transcription termination	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	604	730
IPR000330	SNF2_N	244	492

External Links

No external refs found!

Cpa|evm.model.tig00021760.3 (CHR20, ATRX)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation