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  5. Cpa|evm.model.tig00021612.46

Cpa|evm.model.tig00021612.46


Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM11-TRM112 tRNA guanosine-methyltransferase complex.TRM112 component


Gene families : OG0005945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021612.46
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G22270 No alias Trm112p-like protein 0.01 OrthoFinder output from all 47 species
Adi_g012156 No alias component *(TRM112) of TRM11-TRM112 tRNA... 0.03 OrthoFinder output from all 47 species
Dac_g35153 No alias component *(TRM112) of TRM11-TRM112 tRNA... 0.01 OrthoFinder output from all 47 species
Dcu_g04387 No alias component *(TRM112) of TRM11-TRM112 tRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os07g43020.1 LOC_Os07g43020 component TRM112 of TRM9-TRM112 tRNA... 0.02 OrthoFinder output from all 47 species
Msp_g42155 No alias component *(TRM112) of TRM11-TRM112 tRNA... 0.02 OrthoFinder output from all 47 species
Solyc04g074150.3.1 Solyc04g074150 component TRM112 of TRM9-TRM112 tRNA... 0.01 OrthoFinder output from all 47 species
Tin_g29599 No alias component *(TRM112) of TRM11-TRM112 tRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR005651 Trm112-like 3 97
No external refs found!