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  5. Cpa|evm.model.tig00021537.24

Cpa|evm.model.tig00021537.24 (U2B'')


Aliases : U2B''

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2B snRNP component


Gene families : OG0003415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021537.24

Target Alias Description ECC score Gene Family Method Actions
AT2G47580 U1A spliceosomal protein U1A 0.02 OrthoFinder output from all 47 species
Adi_g059478 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008109 U2B'' not classified & original description: CDS=1-612 0.02 OrthoFinder output from all 47 species
Ceric.03G039600.1 Ceric.03G039600 component *(U2B) of U2 snRNP complex & original... 0.01 OrthoFinder output from all 47 species
Cre13.g566700 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dcu_g00743 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g18720.1 LOC_Os03g18720 protein factor U2B of U2 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
MA_10129927g0010 U1A U1 small nuclear ribonucleoprotein A OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Mp5g12580.1 No alias component U1A of U1 small nuclear ribonucleoprotein... 0.01 OrthoFinder output from all 47 species
Msp_g00949 No alias component *(U2B) of U2 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0135.g022362 No alias component *(U2B) of U2 snRNP complex & original... 0.01 OrthoFinder output from all 47 species
Tin_g04348 No alias component *(U2B) of U2 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e031154_P002 U1A, Zm00001e031154 component U1A of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030030 cell projection organization IEP HCCA
BP GO:0030031 cell projection assembly IEP HCCA
CC GO:0034464 BBSome IEP HCCA
BP GO:0044782 cilium organization IEP HCCA
BP GO:0060271 cilium assembly IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0120031 plasma membrane bounded cell projection assembly IEP HCCA
BP GO:0120036 plasma membrane bounded cell projection organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 177 236
IPR000504 RRM_dom 42 111
No external refs found!