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  5. Cpa|evm.model.tig00021374.9

Cpa|evm.model.tig00021374.9


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021374.9
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT1G49230 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
Aop_g26548 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Dac_g34914 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g43496 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g15134 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Dcu_g18286 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39486 No alias RING-H2 finger protein ATL16 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os06g06150.1 LOC_Os06g06150 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g07702 BRH1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_1115518g0010 ATL2, TL2 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_25345g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Ore_g16906 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g28091 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ore_g39132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40735 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015449 No alias not classified & original description: CDS=1-711 0.01 OrthoFinder output from all 47 species
Sam_g20097 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc08g082680.3.1 Solyc08g082680 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc11g005320.1.1 Solyc11g005320 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Zm00001e014764_P001 Zm00001e014764 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 385 427
No external refs found!