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  5. Cpa|evm.model.tig00021222.7

Cpa|evm.model.tig00021222.7 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.RNPS1 component


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021222.7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00150630 RNPS1, SR45,... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Adi_g113272 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g51408 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Aspi01Gene38440.t1 RNPS1, SR45,... component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cre03.g164950 RNPS1, SR45 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dde_g10398 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Lfl_g18973 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Mp4g11580.1 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Pir_g37350 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019602 RNPS1, SR45 not classified & original description: CDS=110-1036 0.02 OrthoFinder output from all 47 species
Sam_g14861 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g36997 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Spa_g07702 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Spa_g44110 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Tin_g01053 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 71 138
No external refs found!