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  5. Cpa|evm.model.tig00021133.4

Cpa|evm.model.tig00021133.4


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D2 component


Gene families : OG0003421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021133.4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00221440 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
AT2G47640 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
AT3G62840 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
Adi_g052390 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Als_g20203 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Aob_g27074 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cba_g54636 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cre10.g453450 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.12 OrthoFinder output from all 47 species
GSVIVT01028015001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
LOC_Os05g24970.1 LOC_Os05g24970 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.09 OrthoFinder output from all 47 species
Lfl_g33846 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Mp3g10740.1 No alias component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species
Pp3c10_17640V3.1 Pp3c10_17640 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Pp3c12_17690V3.1 Pp3c12_17690 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Solyc09g075130.3.1 Solyc09g075130 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Tin_g15303 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Zm00001e007570_P002 Zm00001e007570 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 31 102
No external refs found!