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  5. Cpa|evm.model.tig00021094.26

Cpa|evm.model.tig00021094.26


Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021094.26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Aev_g01587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cre12.g492450 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01022608001 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g10916 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g14536 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc04g007510.4.1 Solyc04g007510 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.01 OrthoFinder output from all 47 species
Spa_g08111 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1143 1215
IPR014720 dsRBD_dom 263 328
IPR001650 Helicase_C 881 997
No external refs found!