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  5. Cpa|evm.model.tig00020961.20

Cpa|evm.model.tig00020961.20


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020961.20
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g089100 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g02224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008951 No alias not classified & original description: CDS=4-2886 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.02 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.01 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g08320.1 LOC_Os07g08320 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_92056g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g48141 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g31530 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 206 268
IPR000504 RRM_dom 284 353
IPR000504 RRM_dom 127 196
No external refs found!