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  5. Cpa|evm.model.tig00020943.85

Cpa|evm.model.tig00020943.85


Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020943.85

Target Alias Description ECC score Gene Family Method Actions
AT3G16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
Adi_g059251 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g110755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28540 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g25755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25756 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g36186 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene16970.t1 Aspi01Gene16970 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0123.g048442 No alias not classified & original description: CDS=180-2516 0.03 OrthoFinder output from all 47 species
Cba_g02048 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.13G087700.1 Ceric.13G087700 not classified & original description: pacid=50636878... 0.04 OrthoFinder output from all 47 species
Cre01.g022350 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.16 OrthoFinder output from all 47 species
Dac_g46202 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027957001 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Gb_06963 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43140.1 LOC_Os04g43140 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Lfl_g17451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436248g0010 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Mp5g03860.1 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Nbi_g10891 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g05630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15235 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc09g090740.4.1 Solyc09g090740 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Tin_g30625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007582_P001 Zm00001e007582 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 634 740
IPR011545 DEAD/DEAH_box_helicase_dom 199 383
No external refs found!