Cpa|evm.model.tig00020943.20


No description available


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020943.20

Target Alias Description ECC score Gene Family Method Actions
AT1G71020 No alias ARM repeat superfamily protein 0.01 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g15449 PUB18, ATPUB18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g16654 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.01 OrthoFinder output from all 47 species
Ceric.26G012900.1 Ceric.26G012900 not classified & original description: pacid=50598948... 0.01 OrthoFinder output from all 47 species
Dac_g08480 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g44834 ATPUB17, PUB17 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Gb_20805 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
LOC_Os08g32060.1 LOC_Os08g32060 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Len_g16436 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Mp5g12560.1 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g03120 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05525 PUB14, ATPUB14 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g11291 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g29462 ATPUB17, PUB17 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097 No alias not classified & original description: CDS=1-2154 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013821 No alias not classified & original description: CDS=1-987 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016119 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=1314-3077 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023812 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=1-1965 0.02 OrthoFinder output from all 47 species
Sam_g06298 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Smo420513 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08558 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02458 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g30902 PUB13, ATPUB13 E3 ubiquiTin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e002954_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000225 Armadillo 237 272
IPR000048 IQ_motif_EF-hand-BS 676 694
IPR000048 IQ_motif_EF-hand-BS 857 874
No external refs found!