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  5. Cpa|evm.model.tig00020912.17

Cpa|evm.model.tig00020912.17


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020912.17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00047670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Adi_g022523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Adi_g024751 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Adi_g038820 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Adi_g053483 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Azfi_s0373.g067189 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Dcu_g05211 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
GSVIVT01019262001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
LOC_Os02g01250.1 LOC_Os02g01250 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13760.1 LOC_Os03g13760 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Lfl_g11459 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
MA_9431878g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Msp_g07432 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Nbi_g20365 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Sam_g44867 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Smo112116 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Solyc02g062240.3.1 Solyc02g062240 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Solyc02g084020.3.1 Solyc02g084020 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Solyc03g033600.3.1 Solyc03g033600 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Zm00001e001000_P001 Zm00001e001000 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Zm00001e013395_P002 Zm00001e013395 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Zm00001e038613_P001 Zm00001e038613 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030030 cell projection organization IEP HCCA
BP GO:0030031 cell projection assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034464 BBSome IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044782 cilium organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060271 cilium assembly IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0120031 plasma membrane bounded cell projection assembly IEP HCCA
BP GO:0120036 plasma membrane bounded cell projection organization IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 72
No external refs found!