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  5. Cpa|evm.model.tig00020902.59

Cpa|evm.model.tig00020902.59


Description : Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana


Gene families : OG0001739 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020902.59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00026300 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
AMTR_s00103p00032160 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
AT3G49660 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Cba_g50792 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Dde_g10622 No alias component *(WDR5/SWD3) of COMPASS histone trimethylation... 0.01 OrthoFinder output from all 47 species
Len_g17499 No alias substrate adaptor *(DHU1) of CUL4-based ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g04561 No alias component *(WDR5/SWD3) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
Ppi_g02830 No alias substrate adaptor *(DHU1) of CUL4-based ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Ppi_g40897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13235 No alias component *(WDR5/SWD3) of COMPASS histone trimethylation... 0.02 OrthoFinder output from all 47 species
Tin_g37500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 77 105
IPR001680 WD40_repeat 4 27
IPR001680 WD40_repeat 33 70
IPR001680 WD40_repeat 209 233
IPR001680 WD40_repeat 298 329
No external refs found!