Cpa|evm.model.tig00020848.19 (RPAC43, ATRPAC43)

Aliases : RPAC43, ATRPAC43

Description : DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana

Gene families : OG0005805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005805_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020848.19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00192780	RPAC43,...	DNA-directed RNA polymerases II, IV and V subunit 3...	0.02	OrthoFinder output from all 47 species
Cre07.g313302	RPAC43, ATRPAC43	DNA-directed RNA polymerases IV and V subunit 3B...	0.02	OrthoFinder output from all 47 species
Gb_00262	RPAC43, ATRPAC43	DNA-directed RNA polymerases IV and V subunit 3B...	0.01	OrthoFinder output from all 47 species
LOC_Os03g18410.1	RPAC43,...	DNA-directed RNA polymerases II, IV and V subunit 3...	0.04	OrthoFinder output from all 47 species
Len_g02754	RPAC43, ATRPAC43	component *(NRPC3) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Mp6g21330.1	RPAC43, ATRPAC43	DNA-directed RNA polymerases II, IV and V subunit 3...	0.01	OrthoFinder output from all 47 species
Sam_g28337	No alias	component *(NRPC3) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Solyc12g015780.2.1	RPAC43,...	DNA-directed RNA polymerases II, IV and V subunit 3...	0.05	OrthoFinder output from all 47 species
Tin_g01962	RPAC43, ATRPAC43	component *(NRPC3) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e025351_P001	RPAC43,...	DNA-directed RNA polymerases IV and V subunit 3B...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	71	355
IPR011262	DNA-dir_RNA_pol_insert	117	248

External Links

No external refs found!

Cpa|evm.model.tig00020848.19 (RPAC43, ATRPAC43)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation