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  5. Cpa|evm.model.tig00020816.45

Cpa|evm.model.tig00020816.45


No description available


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020816.45
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Ala_g33594 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.01 OrthoFinder output from all 47 species
Gb_08298 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10435839g0010 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10436625g0010 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_873737g0010 SDE1, RDR6, SGS2 Probable RNA-dependent RNA polymerase SHL2 OS=Oryza... 0.02 OrthoFinder output from all 47 species
MA_9045725g0010 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Ore_g03519 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g15139 ATRDRP1, RDR1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g17422 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g02005 ATRDRP1, RDR1 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0018298 obsolete protein-chromophore linkage IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA

No InterPro domains available for this sequence

No external refs found!