LOC_Os02g10300 (Os02g0196700)


Aliases : Os02g0196700

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000381 (Gene family) Phylogenetic Tree(s): OG0000381_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os02g10300
Cluster HCCA cluster: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT2G40310 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT3G07820 No alias Pectin lyase-like superfamily protein 0.04 Gene family
AT3G07830 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT3G07850 No alias Pectin lyase-like superfamily protein 0.06 Gene family
AT3G14040 No alias Pectin lyase-like superfamily protein 0.05 Gene family
AT5G48140 No alias Pectin lyase-like superfamily protein 0.06 Gene family
GSVIVT01030017001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01030023001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc00g030510.3.1 Solyc00g030510.3 10.6.3 cell wall.degradation.pectate lyases and... 0.08 Gene family
Solyc02g069480.2.1 Solyc02g069480.2 No description available 0.01 Gene family
Solyc07g044870.3.1 Solyc07g044870.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d015821 GRMZM2G151755 10.6.3 cell wall.degradation.pectate lyases and... 0.1 Gene family
Zm00001d015825 GRMZM2G374375 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d036815 GRMZM2G160626 10.6.3 cell wall.degradation.pectate lyases and... 0.11 Gene family
Zm00001d036816 GRMZM2G160526 10.6.3 cell wall.degradation.pectate lyases and... 0.07 Gene family
Zm00001d036821 GRMZM2G094811 10.6.3 cell wall.degradation.pectate lyases and... 0.1 Gene family
Zm00001d036822 GRMZM2G394259 10.6.3 cell wall.degradation.pectate lyases and... 0.12 Gene family
Zm00001d036823 GRMZM2G320175,... 10.6.3 cell wall.degradation.pectate lyases and... 0.1 Gene family
Zm00001d036824 GRMZM2G066675,... 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Zm00001d040965 GRMZM2G112579 10.6.3 cell wall.degradation.pectate lyases and... 0.08 Gene family
Zm00001d053662 GRMZM2G030265 10.6.3 cell wall.degradation.pectate lyases and... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 109 438
No external refs found!