LOC_Os02g09920 (Os02g0192400)


Aliases : Os02g0192400

Description : 27.3.59 RNA.regulation of transcription.Methyl binding domain proteins Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. methyl-CPG-binding domain 9 (MBD9)


Gene families : OG_01_0004127 (Gene family) Phylogenetic Tree(s): OG0004127_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os02g09920
Cluster HCCA cluster: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.03 Gene family
GSVIVT01020232001 No alias 27.3.59 RNA.regulation of transcription.Methyl binding... 0.02 Gene family
GSVIVT01032492001 No alias 27.3.59 RNA.regulation of transcription.Methyl binding... 0.02 Gene family
MA_41907g0010 No alias 27.3.59 RNA.regulation of transcription.Methyl binding... 0.02 Gene family
Solyc05g005640.3.1 Solyc05g005640.3 27.3.59 RNA.regulation of transcription.Methyl binding... 0.05 Gene family
Zm00001d053697 GRMZM2G084296,... 27.3.59 RNA.regulation of transcription.Methyl binding... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR028942 WHIM1_dom 189 232
IPR001487 Bromodomain 2 52
IPR019787 Znf_PHD-finger 110 156
No external refs found!