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  5. Cpa|evm.model.tig00020592.56

Cpa|evm.model.tig00020592.56


Description : Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN13 regulatory component


Gene families : OG0005876 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005876_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020592.56
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00208510 RPN13,... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
AT2G26590 RPN13 regulatory particle non-ATPase 13 0.01 OrthoFinder output from all 47 species
Aop_g12263 RPN13 regulatory component *(RPN13) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Dcu_g39973 RPN13 regulatory component *(RPN13) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dde_g09938 RPN13 regulatory component *(RPN13) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
GSVIVT01032266001 RPN13 Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR006773 Rpn13/ADRM1 20 103
IPR032368 RPN13_DEUBAD 198 281
No external refs found!