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  5. Cpa|evm.model.tig00020572.59

Cpa|evm.model.tig00020572.59 (ATUPF3, UPF3)


Aliases : ATUPF3, UPF3

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF3 component


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020572.59

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Sam_g35984 No alias component *(UPF3) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Solyc01g103420.4.1 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Solyc10g044450.3.1 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species
Zm00001e040916_P004 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 18 180
No external refs found!